Miao Sun | 孙苗
Miao Sun | 孙苗
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JSE: Capturing single-copy nuclear genes, organellar genomes, and nuclear ribosomal DNA from deep genome skimming data for plant phylogenetics: A case study in Vitaceae
With the decreasing cost and availability of many newly developed bioinformatics pipelines, next-generation sequencing (NGS) has …
Bin-Bin Liu
,
Zhi-Yao Ma
,
Chen Ren
,
Richard G. J. Hodel
,
**_Miao Sun_**
,
Xiu-Qun Liu
,
Guang-Ning Liu
,
De-Yuan Hong
,
Elizabeth A. Zimmer
,
Jun Wen
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DOI
Front. Ecol. Evol.: Relative Importance of Ecological, Evolutionary and Anthropogenic Pressures on Extinction Risk in Chinese Angiosperm Genera
China has many threatened plant species, which are exposed to environmental degradation and other anthropogenic pressures. We assessed …
Haibin Yu
,
Xinghua Sui
,
**_Miao Sun_**
,
Xue Yin
,
David C. Deane
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DOI
Syst. Biol.: The implications of incongruence between gene tree and species tree topologies for divergence time estimation
Phylogenetic analyses are increasingly being performed with datasets that incorporate hundreds of loci. Due to incomplete lineage …
Tom Carruthers
,
**_Miao Sun_**
,
William J Baker
,
Stephen A Smith
,
Jurriaan M de Vos
,
Wolf L Eiserhardt
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PLoS ONE: Biogeographical patterns and speciation of the genus Pinguicula (Lentibulariaceae) inferred by phylogenetic analyses
Earlier phylogenetic studies in the genus
Pinguicua
(Lentibulariaceae) suggested that the species within a geographical region was …
Hiro Shimai
,
Hiroaki Setoguchi
,
David L. Roberts
,
**_Miao Sun_**
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DOI
Noise does not equal bias in assessing the evolutionary history of the angiosperm flora of China: A response to Qian (2019)
In response to our paper on the evolutionary history of the Chinese flora, Qian suggests that certain features of the divergence time …
Li-Min Lu
,
Hai-Hua Hu
,
Dan-Xiao Peng
,
Bing Liu
,
Jian-Fei Ye
,
Tuo Yang
,
Hong-Lei Li
,
**_Miao Sun_**
,
Stephen A. Smith
,
Pamela S. Soltis
,
Douglas E. Soltis
,
Zhi‐Duan Chen
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DOI
Recent accelerated diversification in rosids occurred outside the tropics
Conflicting relationships have been found between diversification rate and temperature across disparate clades of life. Here, we use a …
Miao Sun | 孙苗
,
Ryan A Folk
,
Matthew A Gitzendanner
,
Pamela S Soltis
,
Zhi‐Duan Chen
,
Douglas E Soltis
,
Robert P Guralnick
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AJB: Estimating rates and patterns of diversification with incomplete sampling: a case study in the rosids
Recent advances in generating large‐scale phylogenies enable broad‐scale estimation of species diversification. These now common …
Miao Sun
,
Ryan A Folk
,
Matthew A Gitzendanner
,
Pamela S Soltis
,
Zhi‐Duan Chen
,
Douglas E Soltis
,
Robert P Guralnick
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Project
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DOI
SciAdv: The evolutionary origins of the cat attractant nepetalactone in catnip
Catnip or catmint (
Nepeta
spp.) is a flowering plant in the mint family (Lamiaceae) famed for its ability to attract cats. This …
Benjamin R. Lichman
,
Grant T. Godden
,
John P. Hamilton
,
Lira Palmer
,
Mohamed O. Kamileen
,
Dongyan Zhao
,
Brieanne Vaillancourt
,
Joshua C. Wood
,
**_Miao Sun_**
,
Taliesin Kinser
,
Douglas E. Soltis
,
Pamela S. Soltis
,
C. Robin Buell
,
Sarah E.O'Connor
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Poster
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DOI
MPE: Phylogeny and divergence time estimation of the walnut family (Juglandaceae) based on nuclear RAD-Seq and chloroplast genome data
The walnut family Juglandaceae was widely distributed in the Northern Hemisphere while several extant genera now exhibit …
Xian-Yun Mu
,
Ling Tong
,
**_Miao Sun_**
,
Yi-Xuan Zhu
,
Jun Wen
,
Qin-Wen Lin
,
Bing Liu
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DOI
MPE: Accelerated diversification correlated with functional traits shapes extant diversity of the early divergent angiosperm family Annonaceae
A major goal of phylogenetic systematics is to understand both the patterns of diversification and the processes by which these …
B. Xue
,
X. Guo
,
J.B. Landis
,
Miao Sun
,
C.C. Tang
,
P.S. Soltis
,
D.E. Soltis
,
R.M.K. Saunders
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Source Document
DOI
Ecology: For common community phylogenetic analyses, go ahead and use synthesis phylogenies
Should we build our own phylogenetic trees based on gene sequence data, or can we simply use available synthesis phylogenies? This is a …
Daijiang Li
,
Lauren Trotta
,
Hannah E Marx
,
Julie M Allen
,
**_Miao Sun_**
,
Douglas E Soltis
,
Pamela S Soltis
,
Robert P Guralnick
,
Benjamin H Baiser
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Project
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DOI
Evolutionary history of the angiosperm flora of China
High species diversity may result from recent rapid speciation in a ‘cradle’ and/or the gradual accumulation and preservation of …
Li-Min Lu
,
Ling-Feng Mao
,
Tuo Yang
,
Jian-Fei Ye
,
Bing Liu
,
Hong-Lei Li
,
Miao Sun | 孙苗
,
Joseph T Miller
,
Sarah Mathews
,
Hai-Hua Hu
,
others
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Phytotaxa: Moving from modern toward post-modern science: comment on “An integrated assessment of the vascular plants of the Americas”
Recently Ulloa Ulloa et al.(2017) published a 2600-page online checklist of the New World vascular plants (the Checklist hereafter) …
Evgeny V. Mavrodiev
,
**_Miao Sun_**
,
Laura Schroder
,
David W. Steadman
,
Malte C. Ebach
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Source Document
DOI
Nature---ISME: Phylogenetic imprint of woody plants on the soil mycobiome in natural mountain forests of eastern China
Recent studies have detected strong phylogenetic signals in tree–fungus associations for diseased leaves and mycorrhizal symbioses. …
Teng Yang
,
Leho Tedersoo
,
Pamela S Soltis
,
Douglas E Soltis
,
Jack A Gilbert
,
Miao Sun
,
Yu Shi
,
Hongfei Wang
,
Yuntao Li
,
Jian Zhang
,
others
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DOI
AJB: Challenges of comprehensive taxon sampling in comparative biology: Wrestling with rosids
Using phylogenetic approaches to test hypotheses on a large scale, in terms of both species sampling and associated species traits and …
Ryan A Folk
,
**_Miao Sun_**
,
Pamela S Soltis
,
Stephen A Smith
,
Douglas E Soltis
,
Robert P Guralnick
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Project
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DOI
FPLS: Unveiling the Identity of Wenwan Walnuts and Phylogenetic Relationships of Asian Juglans Species Using Restriction Site-Associated DNA-Sequencing
Juglans
species have considerable ecological and economic value worldwide. In China, Wenwan walnuts have been collected by aristocrats …
Xian-Yun Mu
,
**_Miao Sun_**
,
Pei-Fang Yang
,
Qin-Wen Lin
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DOI
JSE: Global versus Chinese perspectives on the phylogeny of the N-fixing clade
There has been increasing interest in integrating a regional tree of life with community assembly rules in the ecological research. …
Hong-Lei Li
,
Wei Wang
,
Rui-Qi Li
,
Jing-Bo Zhang
,
**_Miao Sun_**
,
Rehan Naeem
,
Jun-Xia Su
,
Xiao-Guo Xiang
,
Peter E Mortimer
,
De-Zhu Li
,
others
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Project
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JSE: Tree of life for the genera of Chinese vascular plants
We reconstructed a phylogenetic tree of Chinese vascular plants (Tracheophyta) using sequences of the chloroplast genes
atpB
,
matK
, …
Zhi-Duan Chen
,
Tuo Yang
,
Li Lin
,
Li-Min Lu
,
Hong-Lei Li
,
**_Miao Sun_**
,
Bing Liu
,
Min Chen
,
Yan-Ting Niu
,
Jian-Fei Ye
,
others
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DOI
JSE: Phylogeny of the Rosidae: A dense taxon sampling analysis
Rosidae
, a clade of approximately 90,000 species of angiosperms, exhibits remarkable morphological diversity and extraordinary …
Miao Sun
,
Rehan Naeem
,
Jun-Xia Su
,
Zhi-Yong Cao
,
J Gordon Burleigh
,
Pamela S Soltis
,
Douglas E Soltis
,
Zhi-Duan Chen
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Project
DOI
APPS: The report of my death was an exaggeration: A review for researchers using microsatellites in the 21st century
Microsatellites, or simple sequence repeats (SSRs), have long played a major role in genetic studies due to their typically high …
Richard GJ Hodel
,
M Claudia Segovia-Salcedo
,
Jacob B Landis
,
Andrew A Crowl
,
**_Miao Sun_**
,
Xiaoxian Liu
,
Matthew A Gitzendanner
,
Norman A Douglas
,
Charlotte C Germain-Aubrey
,
Shichao Chen
,
others
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DOI
APPS: A new resource for the development of SSR markers: Millions of loci from a thousand plant transcriptomes
Premise of the study:
The One Thousand Plant Transcriptomes Project (1KP, 1000+ assembled plant transcriptomes) provides an enormous …
Richard GJ Hodel
,
Matthew A Gitzendanner
,
Charlotte C Germain-Aubrey
,
Xiaoxian Liu
,
Andrew A Crowl
,
**_Miao Sun_**
,
Jacob B Landis
,
M Claudia Segovia-Salcedo
,
Norman A Douglas
,
Shichao Chen
,
others
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Source Document
DOI
Deep phylogenetic incongruence in the angiosperm clade Rosidae
Sun et al. (2015) found phylogentic incongruence of COM clade among three plant genomic datasets (cp, mt and nu), and then they used nuclear genomic data showed that potential ancient hybridization could cause the gene tree conflicts.
Miao Sun | 孙苗
,
Douglas E Soltis
,
Pamela S Soltis
,
Xinyu Zhu
,
J Gordon Burleigh
,
Zhi‐Duan Chen
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Project
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Exploring deep phylogenetic incongruence of the COM clade in Rosidae: Phylogenomics approach [PhD dissertation]
Analysis of large data sets can help resolve difficult nodes in the tree of life and also concomitantly reveal complex evolutionary …
Miao Sun
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Tree of Life and Its Applications
The term “Tree of Life” was first used by Charles Darwin in 1859 as a metaphor for describing phylogenetic relationships among …
Limin Lu
,
**_Miao Sun_**
,
Jingbo Zhang
,
Honglei Li
,
Li Lin
,
Tuo Yang
,
Min Chen
,
Zhi‐Duan Chen
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DOI
Genome: Identification of nuclear low-copy genes and their phylogenetic utility in rosids
By far, the interordinal relationships in rosids remain poorly resolved. Previous studies based on chloroplast, mitochondrial, and …
Baohua Wang
,
Yan Zhang
,
Peipei Wei
,
Miao Sun
,
Xiaofei Ma
,
Xinyu Zhu
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Project
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DOI
JSE: A revision of Elaeagnus L. (Elaeagnaceae) in mainland China
A revision of
Elaeagnus
L. for mainland China is provided based on field observations and herbarium studies. Forty‐two morphological …
Miao Sun
,
Qi Lin
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DOI
Validation of eight names of Chinese taxa in Ranunculaceae, Rosaceae and Scrophulariaceae
Eight names in five genera
Delphinium
(Ranunculaceae),
Lindernia
and
Mimulicalyx
(Scrophulariaceae),
Sorbus
and
Spiraea
(Rosaceae) from …
Qi Lin
,
**_Miao Sun_**
,
Qian Sun
,
Shu-Qing Bei
,
Hong-Li Li
,
Zhi-Rong Yang
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DOI
Primary Taxonomic Study of Elaeagnus ( Elaeagnaceae) in Mainland China
Based on field observations in Chongqing, Hubei, Jiangxi, Yunnan, Zhejiang etc. provinces, and comprehensive study on more than 7,000 …
Miao Sun
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Lectotypification of twenty names of Chinese taxa in Angiospermae [In Chinese]
Based on examinations of type specimens housed at PE, lectotypes for twenty names of Chinese taxa in Angiospermae are here designated …
Qi Lin
,
Shu-Qing Bei
,
Hong-Li Li
,
Zi-Yu Cao
,
Qian Sun
,
**_Miao Sun_**
,
Zhi-Rong Yang
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DOI
Lectotypification of five scientific names in Rosaceae [In Chinese]
Lectotypes for five names in Rosaceae are here designated under Article 8.1,8.3,9.9,9.14 and 37.2, Recommendation 9A.2 and 9A.3, and …
Miao Sun
,
Qi Lin
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![Exploring deep phylogenetic incongruence of the COM clade in Rosidae: Phylogenomics approach [PhD dissertation]](/publication/sun2014dissertation/featured_hu9a35e732d76e288dfe10f9347ee82d1b_160704_150x0_resize_lanczos_3.png)
